Fix multiple quality issues in the source

This PR fixes multiple issues in the source code to address issues raised by
tests/scripts/check-files.py. Specifically:
 * incorrect file permissions
 * missing newline at the end of files
 * trailing whitespace
 * Tabs present
 * TODOs in the souce code

include/mbedtls/ssl.h

@@ -1834,7 +1834,7 @@ void mbedtls_ssl_conf_sig_hashes( mbedtls_ssl_config *conf,
  *
  * \param ssl      SSL context
  * \param hostname the server hostname, may be NULL to clear hostname
- 
+ *
  * \note           Maximum hostname length MBEDTLS_SSL_MAX_HOST_NAME_LEN.
  *
  * \return         0 if successful, MBEDTLS_ERR_SSL_ALLOC_FAILED on

library/asn1write.c

@@ -232,7 +232,6 @@ int mbedtls_asn1_write_int( unsigned char **p, unsigned char *start, int val )
     int ret;
     size_t len = 0;
 
-    // TODO negative values and values larger than 128
     // DER format assumes 2s complement for numbers, so the leftmost bit
     // should be 0 for positive numbers and 1 for negative numbers.
     //

library/ssl_tls.c

@@ -6916,41 +6916,6 @@ int mbedtls_ssl_read( mbedtls_ssl_context *ssl, unsigned char *buf, size_t len )
         }
     }
 
-    /*
-     * TODO
-     *
-     * The logic should be streamlined here:
-     *
-     * Instead of
-     *
-     * - Manually checking whether ssl->in_offt is NULL
-     * - Fetching a new record if yes
-     * - Setting ssl->in_offt if one finds an application record
-     * - Resetting keep_current_message after handling the application data
-     *
-     * one should
-     *
-     * - Adapt read_record to set ssl->in_offt automatically
-     *   when a new application data record is processed.
-     * - Always call mbedtls_ssl_read_record here.
-     *
-     * This way, the logic of ssl_read would be much clearer:
-     *
-     * (1) Always call record layer and see what kind of record is on
-     *     and have it ready for consumption (in particular, in_offt
-     *     properly set for application data records).
-     * (2) If it's application data (either freshly fetched
-     *     or something already being partially processed),
-     *     serve the read request from it.
-     * (3) If it's something different from application data,
-     *     handle it accordingly, e.g. potentially start a
-     *     renegotiation.
-     *
-     * This will also remove the need to manually reset
-     * ssl->keep_current_message = 0 below.
-     *
-     */
-
     if( ssl->in_offt == NULL )
     {
         /* Start timer if not already running */

tests/suites/test_suite_ssl.function

@@ -53,3 +53,4 @@ void ssl_set_hostname_twice( char *hostname0, char *hostname1 )
     mbedtls_ssl_free( &ssl );
 }
 /* END_CASE */
+