diff --git a/doxygen/mbedtls.doxyfile b/doxygen/mbedtls.doxyfile
index ce58d6b12..0cb092e37 100644
--- a/doxygen/mbedtls.doxyfile
+++ b/doxygen/mbedtls.doxyfile
@@ -664,7 +664,7 @@ WARN_LOGFILE           =
 # directories like "/usr/src/myproject". Separate the files or directories
 # with spaces.
 
-INPUT                  = ../include input
+INPUT                  = ../include ../crypto/include input
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is
@@ -696,7 +696,12 @@ RECURSIVE              = YES
 # Note that relative paths are relative to the directory from which doxygen is
 # run.
 
-EXCLUDE                =
+EXCLUDE                = \
+                         ../crypto/include/mbedtls/check_config.h \
+                         ../crypto/include/mbedtls/compat-1.3.h \
+                         ../crypto/include/mbedtls/config.h \
+                         ../crypto/include/mbedtls/error.h \
+                         ../crypto/include/mbedtls/version.h \
 
 # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
 # directories that are symbolic links (a Unix file system feature) are excluded